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miRBase |
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Stem-loop sequence zma-MIR399a |
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Accession | MI0001802 (change log) | |||||
Description | Zea mays miR399a stem-loop | |||||
Gene family | MIPF0000015; MIR399 | |||||
Literature search |
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23 open access papers mention zma-MIR399a | |||||
Stem-loop |
ugugaag -ga ca u c -c c cca a cu 5' agggu gaau cag gcgguucuccu uggca gaagg ugg g gcag u ||||| |||| ||| ||||||||||| ||||| ||||| ||| | |||| 3' uccca cuua guc cguuaagagga accgu cuucc acc c cguu a --uaacg aca cc c a uc c --a - au |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence zma-miR399a-5p |
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Accession | MIMAT0015169 |
Previous IDs | zma-miR399a* |
Sequence |
23 - gugcgguucuccucuggcacg - 43 |
Deep sequencing | 20 reads, 4 experiments |
Evidence | experimental; Illumina [2] |
Mature sequence zma-miR399a-3p |
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Accession | MIMAT0001704 |
Previous IDs | zma-miR399a |
Sequence |
84 - ugccaaaggagaauugcccug - 104 |
Deep sequencing | 627 reads, 10 experiments |
Evidence | experimental; Illumina [2] |
References |
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1 |
"Conservation and divergence of microRNA families in plants"
http://genomebiology.com/2005/6/11/p13 (2005).
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2 |
PMID:19936050
"A genome-wide characterization of microRNA genes in maize"
PLoS Genet. 5:e1000716(2009).
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