Stem-loop zma-MIR399b

Accession

MI0001804

Description

Zea mays zma-MIR399b precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

23 open access papers mention zma-MIR399b
(70 sentences)

Sequence

650 reads, 1933 reads per million, 4 experiments

guagcucagggugcgaaucacaGUGCAGCUCUCCUCUGGCAUGaaggcugugagagaggcaugacaauuucuggccuugcccUGCCAAAGGAGAGCUGUCCUGccauucauuagcccugcaa
......((((((..((((..(((.(((((((((((.(((((..(((((((.((((..(......)..)))))))))))....))))).))))))))))).)))..))))....))))))...

Structure

guagcu      --gc    ca   U           C     --UG       u    ga gc 
      cagggu    gaau  caG GCAGCUCUCCU UGGCA    aaggcug gaga  g  a
      ||||||    ||||  ||| ||||||||||| |||||    ||||||| ||||  |   
      gucccg    cuua  GUC UGUCGAGAGGA ACCGU    uuccggu cuuu  c  u
---aac      auua    cc   C           A     cccg       -    aa ag 

Annotation confidence High

Genome context

chr4: 158285681-158285802 [+]

Mature zma-miR399b-5p

• Accession: MIMAT0015171
• Description: Zea mays zma-miR399b-5p mature miRNA
• Sequence: 23 - GUGCAGCUCUCCUCUGGCAUG - 43
• Evidence: experimental ; Illumina [2]

Mature zma-miR399b-3p

• Accession: MIMAT0001706
• Description: Zea mays zma-miR399b-3p mature miRNA
• Sequence: 83 - UGCCAAAGGAGAGCUGUCCUG - 103
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13