miRBase entry: zma-MIR399f

Stem-loop zma-MIR399f


Accession
MI0001807
Description
Zea mays zma-MIR399f precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
22 open access papers mention zma-MIR399f
(66 sentences)

Sequence

50 reads, 147 reads per million, 2 experiments
caggaugugcaccugcauuucuGGGCAACUUCUCCUUUGGCAGAugcgcgagaaugugccacugcUGCCAAAGGAAAUUUGCCCCGgaauucaucugcacaagca
..(..((((((..((.(((((.((((((.((.(((((((((((..((((......)))).....))))))))))))).)))))).))))).))..))))))..).

Structure
ca ga      cc  c     u      C  C           ---Au    ga 
  g  ugugca  ug auuuc GGGCAA UU UCCUUUGGCAG     gcgc  g
  |  ||||||  || ||||| |||||| || |||||||||||     ||||   
  c  acacgu  ac uaagG CCCGUU AA AGGAAACCGUc     cgug  a
-a ga      cu  u     C      U  -           gucac    ua 


Annotation confidence High
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Genome context
chr6: 163860157-163860261 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from zma-MIR399f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature zma-miR399f-5p

Accession MIMAT0015174
Description Zea mays zma-miR399f-5p mature miRNA
Sequence 23 - GGGCAACUUCUCCUUUGGCAGA - 44
Evidence experimental
Illumina [2]
Database links

Mature zma-miR399f-3p

Accession MIMAT0001709
Description Zea mays zma-miR399f-3p mature miRNA
Sequence 66 - UGCCAAAGGAAAUUUGCCCCG - 86
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13