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miRBase |
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Stem-loop sequence zma-MIR159c |
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Accession | MI0001811 (change log) | ||||
Description | Zea mays miR159c stem-loop | ||||
Gene family | MIPF0000010; MIR159 | ||||
Literature search |
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31 open access papers mention zma-MIR159c | ||||
Stem-loop |
--au ua a auc a uc g ---- c g g g u g -cucu caa - c 5' gau aga aggcg ga gagcucccuucgauccaa ca gaggggaag uggu gguu ca cu ccgg ucaug auaccu ggugcag ug gc g ||| ||| ||||| || |||||||||||||||||| || ||||||||| |||| |||| || || |||| ||||| |||||| ||||||| || || 3' cug ucu ucugu cu cucgagggaaguuagguu gu cucccuuuc accg ccga gu ga ggcc aguac uguggg ucacguc ac cg c cugu -- g -cu c -c g uacu c - a g c g uacgu ucc u u |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Database links |
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Mature sequence zma-miR159c-5p |
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Accession | MIMAT0015178 |
Previous IDs | zma-miR159c* |
Sequence |
23 - gagcucccuucgauccaaucc - 43 |
Deep sequencing | 1183 reads, 175 experiments |
Evidence | experimental; Illumina [2] |
Mature sequence zma-miR159c-3p |
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Accession | MIMAT0001713 |
Previous IDs | zma-miR159c |
Sequence |
178 - cuuggauugaagggagcuccu - 198 |
Deep sequencing | 8606 reads, 195 experiments |
Evidence | experimental; Illumina [2] |
References |
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1 |
"Conservation and divergence of microRNA families in plants"
http://genomebiology.com/2005/6/11/p13 (2005).
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2 |
PMID:19936050
"A genome-wide characterization of microRNA genes in maize"
PLoS Genet. 5:e1000716(2009).
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