Stem-loop zma-MIR167h

Accession

MI0001822

Description

Zea mays zma-MIR167h precursor miRNA

Gene family

MIPF0000023; MIR167_1

Literature search

29 open access papers mention zma-MIR167h
(124 sentences)

Sequence

25847 reads, 54132 reads per million, 127 experiments

acuuugcugcugugagagguUGAAGCUGCCAGCAUGAUCUGgcugcucagacgccggcgggcgucucgagugcucgcucgaucgucggugacgcuuggauucaccaGAUCAUGUUGCAGCUUCACucucucgcagccagcaaa
...((((((((((((((((.(((((((((.((((((((((((.((.(((((((((....)))))))((((((.((((.(((...)))))))))))))))..))))))))))))))))))))))).)))))))))).)))))).

Structure

acu      -          u         C            c  -c  agacgccggcgggcgucu      c    u   u 
   uugcug cugugagagg UGAAGCUGC AGCAUGAUCUGg ug  uc                  cgagug ucgc cga  
   |||||| |||||||||| ||||||||| |||||||||||| ||  ||                  |||||| |||| ||| c
   aacgac gacgcucucu ACUUCGACG UUGUACUAGacc ac  ag                  guucgc agug gcu  
--a      c          C         -            -  uu  ------------------      -    -   g 

Annotation confidence High

Genome context

chr6: 95985872-95986014 [-]

Mature zma-miR167h-5p

• Accession: MIMAT0001724
• Description: Zea mays zma-miR167h-5p mature miRNA
• Sequence: 21 - UGAAGCUGCCAGCAUGAUCUG - 41
• Evidence: experimental ; Illumina [2]

Mature zma-miR167h-3p

• Accession: MIMAT0015189
• Description: Zea mays zma-miR167h-3p mature miRNA
• Sequence: 107 - GAUCAUGUUGCAGCUUCAC - 125
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13