Stem-loop sequence zma-MIR168a

Accession

MI0001824 (change log)

Description

Zea mays miR168a stem-loop

Gene family

MIPF0000081; MIR168

Literature search

34 open access papers mention zma-MIR168a
(156 sentences)

Stem-loop

   gaa  cg     c   g gc             au     c   ccg    g 
5'    gc  cgccg cuc g  ucgcuuggugcag  cggga ccg   cccg c
      ||  ||||| ||| |  |||||||||||||  ||||| |||   |||| c
3'    cg  gcggc gag c  agugaaccacguu  gcccu ggc   gggc g
   -ag  ag     c   g ua             cc     a   --a    a 

Deep sequencing

80986 reads, 1.43e+04 reads per million, 215 experiments

Confidence

Annotation confidence: low

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr5: 76534928-76535031 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075A787_4577
• miRBase Tracker:MI0001824

Mature sequence zma-miR168a-5p

• Accession: MIMAT0001726
• Previous IDs: zma-miR168a
• Sequence: 21 - ucgcuuggugcagaucgggac - 41
• Deep sequencing: 68852 reads, 178 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS000010419E_4577

Mature sequence zma-miR168a-3p

• Accession: MIMAT0015191
• Previous IDs: zma-miR168a*
• Sequence: 67 - cccgccuugcaccaagugaa - 86
• Deep sequencing: 1746 reads, 145 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS0000759EDD_4577

References

1. PMID:15916721 "Identification and characterization of new plant microRNAs using EST analysis" Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA Cell Res. 15:336-360(2005).
2. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
3. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).