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miRBase |
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Stem-loop sequence zma-MIR168a |
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Accession | MI0001824 (change log) | ||||
Description | Zea mays miR168a stem-loop | ||||
Gene family | MIPF0000081; MIR168 | ||||
Literature search |
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34 open access papers mention zma-MIR168a | ||||
Stem-loop |
gaa cg c g gc au c ccg g 5' gc cgccg cuc g ucgcuuggugcag cggga ccg cccg c || ||||| ||| | ||||||||||||| ||||| ||| |||| c 3' cg gcggc gag c agugaaccacguu gcccu ggc gggc g -ag ag c g ua cc a --a a |
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Deep sequencing |
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Confidence |
Annotation confidence: low
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Genome context |
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Database links |
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Mature sequence zma-miR168a-5p |
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Accession | MIMAT0001726 |
Previous IDs | zma-miR168a |
Sequence |
21 - ucgcuuggugcagaucgggac - 41 |
Deep sequencing | 68852 reads, 178 experiments |
Evidence | experimental; Illumina [3] |
Database links |
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Mature sequence zma-miR168a-3p |
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Accession | MIMAT0015191 |
Previous IDs | zma-miR168a* |
Sequence |
67 - cccgccuugcaccaagugaa - 86 |
Deep sequencing | 1746 reads, 145 experiments |
Evidence | experimental; Illumina [3] |
Database links |
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References |
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1 |
PMID:15916721
"Identification and characterization of new plant microRNAs using EST analysis"
Cell Res. 15:336-360(2005).
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2 |
"Conservation and divergence of microRNA families in plants"
http://genomebiology.com/2005/6/11/p13 (2005).
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3 |
PMID:19936050
"A genome-wide characterization of microRNA genes in maize"
PLoS Genet. 5:e1000716(2009).
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