Stem-loop zma-MIR169c

Accession

MI0001826

Description

Zea mays zma-MIR169c precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

31 open access papers mention zma-MIR169c
(232 sentences)

Sequence

1248 reads, 16201 reads per million, 13 experiments

augagguagagaacgggaugCAGCCAAGGAUGACUUGCCGGcuccuggaaccuggaggcgucucagcuugcugugcuguggcuuagaacuuagucGGCAAGUCUGUCCUUGGCUACAccuaguucucuuccucu
..((((.((((((((((.((.((((((((((((((((((((((((........)))...(((.((((.......)))).)))..........))))))))))).)))))))))).))))).))))))).)))).

Structure

au    u       -   a  C          -           uccuggaaccuggaggc   u    uu 
  gagg agagaac ggg ug AGCCAAGGAU GACUUGCCGGc                 guc cagc  g
  |||| ||||||| ||| || |||||||||| |||||||||||                 ||| ||||  c
  cucc ucucuug ucc AC UCGGUUCCUG CUGAACGGcug                 cgg gucg  u
-u    u       a   -  A          U           -------auucaagauu   u    ug 

Annotation confidence Not enough data

Genome context

chr2: 11553338-11553471 [+]

Mature zma-miR169c-5p

• Accession: MIMAT0001728
• Description: Zea mays zma-miR169c-5p mature miRNA
• Sequence: 21 - CAGCCAAGGAUGACUUGCCGG - 41
• Evidence: experimental ; Illumina [3]

Mature zma-miR169c-3p

• Accession: MIMAT0015193
• Description: Zea mays zma-miR169c-3p mature miRNA
• Sequence: 96 - GGCAAGUCUGUCCUUGGCUACA - 117
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360


3. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13