Stem-loop zma-MIR169f

Accession

MI0001827

Description

Zea mays zma-MIR169f precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

31 open access papers mention zma-MIR169f
(218 sentences)

Sequence

296 reads, 1983 reads per million, 6 experiments

accagagcugauucguucagUAGCCAAGGAUGACUUGCCUAgguauauaugcaugggcuauggcuacaugccugagagccagucucuugugacgcugagcauguauaguguaGGCAUGUCUUCCUUGGCUACUcggagcggcucuaguca
((.(((((((.((((...((((((((((((.(((.((((((.((((((((((...((((..(((.....)))....)))).(((......))).....))))))))).).)))))).))).)))))))))))))))).))))))).))..

Structure

--  c       a    uuc            U   U      g -         ---------------aug    --au   u 
  ac agagcug uucg   agUAGCCAAGGA GAC UGCCUA g uauauaugc                  ggcu    ggc a
  || ||||||| ||||   |||||||||||| ||| |||||| | |||||||||                  ||||    ||| c
  ug ucucggc aggc   UCAUCGGUUCCU CUG ACGGau u auauguacg                  ccga    ccg a
ac  a       g    ---            U   U      g g         agucgcaguguucucuga    gagu   u 

Annotation confidence Not enough data

Genome context

chr5: 168617435-168617584 [+]

Mature zma-miR169f-5p

• Accession: MIMAT0001729
• Description: Zea mays zma-miR169f-5p mature miRNA
• Sequence: 21 - UAGCCAAGGAUGACUUGCCUA - 41
• Evidence: experimental ; Illumina [2]

Mature zma-miR169f-3p

• Accession: MIMAT0015194
• Description: Zea mays zma-miR169f-3p mature miRNA
• Sequence: 113 - GGCAUGUCUUCCUUGGCUACU - 133
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13