miRBase entry: zma-MIR169k

Stem-loop zma-MIR169k


Accession
MI0001831
Description
Zea mays zma-MIR169k precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
31 open access papers mention zma-MIR169k
(217 sentences)

Sequence

304 reads, 2351 reads per million, 9 experiments
cgaugagagcacugcucuggUAGCCAAGGAUGACUUGCCUGuggccuccaucagucgcagaggacgcuguucuucugcuugugguugucgaucgcaGGCAGUCUCCUUGGCUAGcccgagcggcucucaucca
.(((((((((.(.((((.((((((((((((.((((.(((((((((..(.((((...((((((((......))))))))...)))).)..).))))))))))))))))))))).))).))))))))))))))..

Structure
-c         a u    u   -         U    U        - cu c    guc        cg 
  gaugagagc c gcuc ggU AGCCAAGGA GACU GCCUGugg c  c auca   gcagagga  c
  ||||||||| | |||| ||| ||||||||| |||| |||||||| |  | ||||   ||||||||   
  cuacucucg g cgag ccG UCGGUUCCU CUGA CGGacgcu g  g uggu   cgucuucu  u
ac         - -    c   A         -    -        a cu u    guu        ug 


Annotation confidence Not enough data
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Genome context
chr7: 142286603-142286735 [+]

Database links

Mature zma-miR169k-5p

Accession MIMAT0001733
Description Zea mays zma-miR169k-5p mature miRNA
Sequence 21 - UAGCCAAGGAUGACUUGCCUG - 41
Evidence experimental
Illumina [2]

Mature zma-miR169k-3p

Accession MIMAT0015196
Description Zea mays zma-miR169k-3p mature miRNA
Sequence 97 - GGCAGUCUCCUUGGCUAG - 114
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13