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miRBase |
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Stem-loop sequence zma-MIR169j |
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Accession | MI0001832 (change log) | ||||
Description | Zea mays miR169j stem-loop | ||||
Gene family | MIPF0000012; MIR169_1 | ||||
Literature search |
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31 open access papers mention zma-MIR169j | ||||
Stem-loop |
gcg -a a - u u cu uu ug uu uc aaccu u 5' auaag gucugucc gau agccaagga gacu gccugugg uc ggcu gc ggc gggcaa ug g ||||| |||||||| ||| ||||||||| |||| |||||||| || |||| || ||| |||||| || 3' uauuc cgggcggg cug ucgguuccu cuga cggacacu ag ccgg ug ccg cucguu gc c --- cc c a - - -- cu -- cu -- auuuu a |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Database links |
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Mature sequence zma-miR169j-5p |
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Accession | MIMAT0001734 |
Previous IDs | zma-miR169j |
Sequence |
21 - uagccaaggaugacuugccug - 41 |
Deep sequencing | 1117 reads, 139 experiments |
Evidence | experimental; Illumina [2] |
Mature sequence zma-miR169j-3p |
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Accession | MIMAT0015197 |
Previous IDs | zma-miR169j* |
Sequence |
116 - ggcagucuccuuggcuag - 133 |
Deep sequencing | 586 reads, 129 experiments |
Evidence | experimental; Illumina [2] |
References |
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1 |
"Conservation and divergence of microRNA families in plants"
http://genomebiology.com/2005/6/11/p13 (2005).
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2 |
PMID:19936050
"A genome-wide characterization of microRNA genes in maize"
PLoS Genet. 5:e1000716(2009).
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