miRBase entry: zma-MIR169d

Stem-loop zma-MIR169d


Accession
MI0001833
Description
Zea mays zma-MIR169d precursor miRNA
Gene family
MIPF0000323; MIR169_4

Literature search
31 open access papers mention zma-MIR169d
(231 sentences)

Sequence

301 reads, 444 reads per million, 4 experiments
gcaauaggggccacucaggcUAGCCAAGGAGACUGCCUAUGaaccucucaaugguccacacauucagguccuuuguaaacaaaggacauaggcaagucauccuuggcuaucagagguaggcccuuauu
..((((((((((.(((.((.(((((((((((((((((((((.((((...((((.......)))).))))((((((....)))))).))))))).)))).)))))))))))).)))...))))))))))

Structure
gc          --a   a  c          -    -       ----------------a    cuc    gu 
  aauaggggcc   cuc gg UAGCCAAGGA GACU GCCUAUG                 accu   aaug  c
  ||||||||||   ||| || |||||||||| |||| |||||||                 ||||   ||||  c
  uuauucccgg   gag cu aucgguuccu cuga cggauac                 ugga   uuac  a
--          aug   a  -          a    a       aggaaacaaauguuucc    --c    ac 


Annotation confidence Not enough data
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Genome context
chr4: 49565639-49565766 [-]

Database links

Mature zma-miR169d

Accession MIMAT0001735
Description Zea mays zma-miR169d mature miRNA
Sequence 21 - UAGCCAAGGAGACUGCCUAUG - 41
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13