miRBase entry: zma-MIR171c

Stem-loop zma-MIR171c


Accession
MI0001835
Description
Zea mays zma-MIR171c precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
19 open access papers mention zma-MIR171c
(51 sentences)

Sequence

5 reads, 39 reads per million, 3 experiments
ggggaaucgaaaaccuacgggaUAUUGGUGCGGUUCAAUCAGAaagcuugcgcuccaaagcccaggggcuccacucuuUGACUGAGCCGUGCCAAUAUCacguccucgcuuugcuugc
(((((............((.(((((((((((((((((.(((((.((...(.(((((........))))).)..)).))))).))))))))))))))))).)))))))...........

Structure
-----------     aucgaaaaccua  g                 A     a  cuu c     aaa 
           gggga            cg gaUAUUGGUGCGGUUCA UCAGA ag   g gcucc   g
           |||||            || ||||||||||||||||| ||||| ||   | |||||    
           cuccu            gc CUAUAACCGUGCCGAGU AGUuu uc   c cgggg   c
cguucguuucg     ------------  a                 C     c  -ac u     acc 


Annotation confidence Not enough data
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Genome context
chr2: 9079646-9079763 [+]

Database links

Mature zma-miR171c-5p

Accession MIMAT0015198
Description Zea mays zma-miR171c-5p mature miRNA
Sequence 23 - UAUUGGUGCGGUUCAAUCAGA - 43
Evidence experimental
Illumina [2]

Mature zma-miR171c-3p

Accession MIMAT0001737
Description Zea mays zma-miR171c-3p mature miRNA
Sequence 79 - UGACUGAGCCGUGCCAAUAUC - 99
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13