Stem-loop zma-MIR171j

Accession

MI0001836

Description

Zea mays zma-MIR171j precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

20 open access papers mention zma-MIR171j
(85 sentences)

Sequence

1681 reads, 4710 reads per million, 113 experiments

aauggccgcgagcuagacggggUAUUGACGCGGUUCAAUUCGAgagcucgagcccuagcagaggccaggggggguggggcucugcucucUGAUUGAGCCGUGCCAAUAUCacgucccacucgcccucgc
...((..(((((...((((.(((((((.((((((((((((.((((((..((((((((.(.....((....))).)))))))).)))))).)))))))))))).))))))).))))...)))))))....

Structure

-aau  cc     cua    g       A            C      uc        g agagg  a 
    gg  gcgag   gacg ggUAUUG CGCGGUUCAAUU GAgagc  gagcccua c     cc g
    ||  |||||   |||| ||||||| |||||||||||| ||||||  |||||||| |     ||  
    cc  cgcuc   cugc CUAUAAC GUGCCGAGUUAG cucucg  cucggggu g     gg g
cgcu  --     acc    a       C            U      -u        g -----  g 

Annotation confidence Not enough data

Genome context

chr10: 59006552-59006680 [+]

Mature zma-miR171j-5p

• Accession: MIMAT0015199
• Description: Zea mays zma-miR171j-5p mature miRNA
• Sequence: 23 - UAUUGACGCGGUUCAAUUCGA - 43
• Evidence: experimental ; Illumina [2]

Mature zma-miR171j-3p

• Accession: MIMAT0001738
• Description: Zea mays zma-miR171j-3p mature miRNA
• Sequence: 90 - UGAUUGAGCCGUGCCAAUAUC - 110
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13