Stem-loop zma-MIR166m

Accession

MI0001842

Description

Zea mays zma-MIR166m precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

32 open access papers mention zma-MIR166m
(190 sentences)

Sequence

114924 reads, 347901 reads per million, 8 experiments

uccuuggucuggggguuuguggGGAAUGUUGGCUGGCUCGAGGcauccgcguccuggcucgcagucgcagcgcagaucguguuuugccugcuaccggccggacagaucgagaggcgUCGGACCAGGCUUCAUUCCUCgcaaaccggugcaucccca
.(((......)))(((((((((((((((..(.((((.((((.((.((((.((((.(((.((..((.((((.(((((......))))))))).)))))))))))....)).)).)).)))).)))).)..)))))))))))))))((.....))...

Structure

uccuuggucuggg               UU G    C    G  a  -  ---c    u   u  ca  c    c     uc 
             gguuuguggGGAAUG  G CUGG UCGA Gc uc cg    gucc ggc cg  gu gcag gcaga  g
             |||||||||||||||  | |||| |||| || || ||    |||| ||| ||  || |||| |||||   
             ccaaacgCUCCUUAC  C GACC GGCU cg ag gc    cagg ccg gc  ca cguc cguuu  u
-accccuacgugg               UU G    A    g  g  a  uaga    -   -  --  u    -     ug 

Annotation confidence High

Genome context

chr5: 216484037-216484192 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR166m

Mature zma-miR166m-5p

• Accession: MIMAT0015204
• Description: Zea mays zma-miR166m-5p mature miRNA
• Sequence: 23 - GGAAUGUUGGCUGGCUCGAGG - 43
• Evidence: experimental ; Illumina [2]

Mature zma-miR166m-3p

• Accession: MIMAT0001744
• Description: Zea mays zma-miR166m-3p mature miRNA
• Sequence: 117 - UCGGACCAGGCUUCAUUCCUC - 137
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13