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miRBase |
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Stem-loop sequence zma-MIR393a |
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Accession | MI0001845 (change log) | ||||
Previous IDs | zma-MIR393 | ||||
Description | Zea mays miR393a stem-loop | ||||
Gene family | MIPF0000083; MIR393 | ||||
Literature search |
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21 open access papers mention zma-MIR393a | ||||
Stem-loop |
cc aa u c c au - - c -- c 5' agg gc gguggagga uccaaagggau gcauugaucu uc uc ac ugc cgc ugc ||| || ||||||||| ||||||||||| |||||||||| || || || ||| ||| || u 3' ucc cg ucaccuuuu agguuucccua cgugacuaga ag ag ug gcg gcg acg cu -g c a a ac c c a ua u |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Database links |
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Mature sequence zma-miR393a-5p |
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Accession | MIMAT0001747 |
Previous IDs | zma-miR393;zma-miR393a |
Sequence |
21 - uccaaagggaucgcauugaucu - 42 |
Deep sequencing | 782 reads, 140 experiments |
Evidence | experimental; Illumina [2] |
Database links |
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Mature sequence zma-miR393a-3p |
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Accession | MIMAT0015207 |
Previous IDs | zma-miR393a* |
Sequence |
88 - aucagugcaaucccuuuggaau - 109 |
Deep sequencing | 272 reads, 39 experiments |
Evidence | experimental; Illumina [2] |
References |
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1 |
"Conservation and divergence of microRNA families in plants"
http://genomebiology.com/2005/6/11/p13 (2005).
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2 |
PMID:19936050
"A genome-wide characterization of microRNA genes in maize"
PLoS Genet. 5:e1000716(2009).
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