miRBase entry: zma-MIR393a

Stem-loop zma-MIR393a


Accession
MI0001845
Description
Zea mays zma-MIR393a precursor miRNA
Gene family
MIPF0000083; MIR393

Literature search
21 open access papers mention zma-MIR393a
(76 sentences)

Sequence

218 reads, 3374 reads per million, 10 experiments
ccaggaagcugguggaggacUCCAAAGGGAUCGCAUUGAUCUauucucaccugccgccugcugcaugcgaugcgagucgacgacaagAUCAGUGCAAUCCCUUUGGAAUuuuccacucgcgccuuc
..(((..((.(((((((((.(((((((((((.((((((((((..((((((.((((((.((...)).)))..))).)).)).))..)))))))))).))))))))))).))))))))).)).)))..

Structure
cc   aa  u         c           C          au  -  -  c   --   c  c 
  agg  gc gguggagga UCCAAAGGGAU GCAUUGAUCU  uc uc ac ugc  cgc ug  
  |||  || ||||||||| ||||||||||| ||||||||||  || || || |||  ||| || u
  ucc  cg ucaccuuuU AGGUUUCCCUA CGUGACUAga  ag ag ug gcg  gcg ac  
cu   -g  c         A           A          ac  c  c  a   ua   u  g 


Annotation confidence Not enough data
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Genome context
chr2: 738724-738849 [+]

Database links

Mature zma-miR393a-5p

Accession MIMAT0001747
Description Zea mays zma-miR393a-5p mature miRNA
Sequence 21 - UCCAAAGGGAUCGCAUUGAUCU - 42
Evidence experimental
Illumina [2]
Database links

Mature zma-miR393a-3p

Accession MIMAT0015207
Description Zea mays zma-miR393a-3p mature miRNA
Sequence 88 - AUCAGUGCAAUCCCUUUGGAAU - 109
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13