Stem-loop zma-MIR160f

Accession

MI0001848

Description

Zea mays zma-MIR160f precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

21 open access papers mention zma-MIR160f
(74 sentences)

Sequence

576 reads, 1329 reads per million, 3 experiments

gaggugaaagauagggaauaUGCCUGGCUCCCUGUAUGCCGcucgcauggcuaccaccgccuguggucguugcggcugGCGUGCGAGGUGCCAGGCAUGuuuuaauaauuaucucc
(((((((.......((((((((((((((.((.((((((((((.(((((((((((........))))))).)))))).)))))))).)).)))))))))))))).....))))))).

Structure

-       aagauag              U  C        -  u    -       cac 
 gagguga       ggaauaUGCCUGGC CC UGUAUGCC Gc cgca uggcuac   c
 |||||||       |||||||||||||| || |||||||| || |||| |||||||    
 cucuauu       uuuuGUACGGACCG GG GCGUGCGg cg gcgu gcuggug   g
c       --aauaa              U  A        u  -    u       ucc 

Annotation confidence Not enough data

Genome context

chr2: 241093436-241093551 [-]

Mature zma-miR160f-5p

• Accession: MIMAT0001750
• Description: Zea mays zma-miR160f-5p mature miRNA
• Sequence: 21 - UGCCUGGCUCCCUGUAUGCCG - 41
• Evidence: experimental ; Illumina [2]

Mature zma-miR160f-3p

• Accession: MIMAT0015209
• Description: Zea mays zma-miR160f-3p mature miRNA
• Sequence: 79 - GCGUGCGAGGUGCCAGGCAUG - 99
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13