Stem-loop sequence ptc-MIR162a

AccessionMI0002209 (change log)
DescriptionPopulus trichocarpa miR162a stem-loop
Gene family MIPF0000127; MIR162_1
Literature search

2 open access papers mention ptc-MIR162a
(12 sentences)

   u      a a     g    c    c       uc   c  gccaa        u 
5'  gggaag c cugga gcag gguu aucgauc  uuc ug     uuuuuugu u
    |||||| | ||||| |||| |||| |||||||  ||| ||     |||||||| a
3'  uccuuc g gaccu cguc ccaa uagcuag  aag ac     aaaaagca g
   u      - c     a    u    a       cc   u  -----        c 
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000348.2: 5079325-5079431 [+]
Database links

Mature sequence ptc-miR162a

Accession MIMAT0001915

78 - 


 - 98

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Evidence experimental; cloned [1]


PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D (2005).
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).