Stem-loop sequence ptc-MIR164b

AccessionMI0002213 (change log)
DescriptionPopulus trichocarpa miR164b stem-loop
Gene family MIPF0000045; MIR164
Literature search

8 open access papers mention ptc-MIR164b
(38 sentences)

   gugag  a    ga    ca         cacu        augcacacagagagggagacgcauuucuugcuggaguuac 
5'      ca gaug  gaag  gggcacgug    acuaacuc                                        g
        || ||||  ||||  |||||||||    ||||||||                                         
3'      gu cuac  cuuc  uccguguac    ugauugag                                        a
   --cua  a    uc    ug         uuau        ugaccucgauuguuuuaguuaucauccauucucagcauug 
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000342.2: 8032134-8032295 [+]
Database links

Mature sequence ptc-miR164b

Accession MIMAT0001919

11 - 


 - 31

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Evidence experimental; cloned [1]


PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D (2005).
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).