Stem-loop sequence ptc-MIR164b

AccessionMI0002213 (change log)
DescriptionPopulus trichocarpa miR164b stem-loop
Gene family MIPF0000045; MIR164
Literature search

8 open access papers mention ptc-MIR164b
(38 sentences)

Stem-loop 
   gugag  a    ga    ca         cacu        augcacacagagagggagacgcauuucuugcuggaguuac 
5'      ca gaug  gaag  gggcacgug    acuaacuc                                        g
        || ||||  ||||  |||||||||    ||||||||                                         
3'      gu cuac  cuuc  uccguguac    ugauugag                                        a
   --cua  a    uc    ug         uuau        ugaccucgauuguuuuaguuaucauccauucucagcauug
Get sequence
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000342.2: 8032134-8032295 [+]
intergenic
Database links

Mature sequence ptc-miR164b

Accession MIMAT0001919
Sequence

11 -  

uggagaagcagggcacgugca

 - 31

Get sequence
Evidence experimental; cloned [1]

References

1
PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
2
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
3
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).