Stem-loop sequence ptc-MIR167f

AccessionMI0002240 (change log)
DescriptionPopulus trichocarpa miR167f stem-loop
Gene family MIPF0000023; MIR167_1
Literature search

6 open access papers mention ptc-MIR167f
(47 sentences)

Stem-loop 
   cucuau   u           g        -uag c      cu 
5'       cag ugaagcugcca caugaucu    c uuccuc  u
         ||| ||||||||||| ||||||||    | ||||||  u
3'       guc acuuugacggu guacuaga    g aaggag  g
   --uguu   c           -        caaa a      uu
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000346.2: 10015916-10016002 [-]
intergenic
Database links

Mature sequence ptc-miR167f-5p

Accession MIMAT0001946
Previous IDsptc-miR167f
Sequence

11 -  

ugaagcugccagcaugaucuu

 - 31

Get sequence
Evidence experimental; miRNAseq [2]

Mature sequence ptc-miR167f-3p

Accession MIMAT0022893
Sequence

61 -  

agaucauguggcaguuucacc

 - 81

Get sequence
Evidence experimental; miRNAseq [2]

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).
2
PMID:22442676 "Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets" Puzey JR, Karger A, Axtell M, Kramer EM PLoS One. 7:e33034(2012).