Stem-loop sequence ptc-MIR171b

AccessionMI0002278 (change log)
DescriptionPopulus trichocarpa miR171b stem-loop
Gene family MIPF0000030; MIR171_1
Literature search

6 open access papers mention ptc-MIR171b
(11 sentences)

Stem-loop 
   uu       a  a        ug                  au    c  a 
5'   auauaua cg gauauugg  cgguucaaucagauagua  gcuc au a
     ||||||| || ||||||||  ||||||||||||||||||  |||| ||  
3'   uguauau gc cuauaacc  gccgaguuaguuuguuau  cgag ua g
   gu       -  a        gu                  cu    a  c
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Confidence Annotation confidence: not enough data
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Database links

Mature sequence ptc-miR171b

Accession MIMAT0001984
Sequence

74 -  

uugagccgugccaauaucacg

 - 94

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Evidence experimental; cloned [1]

References

1
PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
2
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
3
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).