Stem-loop sequence ptc-MIR172d

AccessionMI0002290 (change log)
DescriptionPopulus trichocarpa miR172d stem-loop
Gene family MIPF0000035; MIR172
Literature search

8 open access papers mention ptc-MIR172d
(43 sentences)

Stem-loop 
   ------------------------------------------------------gcauuggcggaugcggcaucaucaagauuca                agu   a        a 
5'                                                                                      caagcuuuaaggcuug   gag gggguggc u
                                                                                        ||||||||||||||||   ||| |||||||| a
3'                                                                                      guucggaauuucgaac   uuc cuccacug c
   auaaacggcuacgucguaguaguucuaaggguauuuuuuccugggaaaccugauuuccuccacuggcauacgguggggagaguga                gau   -        g
Get sequence
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000337.2: 24216475-24216656 [+]
intergenic
Database links

Mature sequence ptc-miR172d

Accession MIMAT0001996
Sequence

153 -  

ggaaucuugaugaugcugcau

 - 173

Get sequence
Evidence by similarity; MI0002294

References

1
PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
2
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
3
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).