Stem-loop sequence ptc-MIR172e

AccessionMI0002291 (change log)
DescriptionPopulus trichocarpa miR172e stem-loop
Gene family MIPF0000035; MIR172
Literature search

8 open access papers mention ptc-MIR172e
(33 sentences)

Stem-loop 
   a    g            g           a  ---aacu      -----c      --u    u  uac 
5'  uauu gccgaugcggca caucaagauuc ca       uuaagg      uugagu   gggg gg   a
    |||| |||||||||||| ||||||||||| ||       ||||||      ||||||   |||| ||    
3'  auaa cggcuacgucgu guaguucuaag gu       aauucc      agcuca   ccuc cc   c
   -    a            a           g  agucuuu      uuggaa      uuu    c  ugg
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000345.2: 4502775-4502907 [+]
intergenic
Database links

Mature sequence ptc-miR172e

Accession MIMAT0001997
Sequence

104 -  

ggaaucuugaugaugcugcau

 - 124

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Evidence by similarity; MI0002294

References

1
PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
2
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
3
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).