Stem-loop sequence ptc-MIR319a

AccessionMI0002296 (change log)
DescriptionPopulus trichocarpa miR319a stem-loop
Gene family MIPF0000010; MIR159
Literature search

8 open access papers mention ptc-MIR319a
(37 sentences)

Stem-loop 
   uaau  cu   a     uu          cuc     u   ag            a -  g   ac       uc  aa     aguuaaagga 
5'     ag  aag gagcu  cuucagucca   auggg ggu  uaggauuuaauu g cu ccg  ucauuca  ca  uacug          c
       ||  ||| |||||  ||||||||||   ||||| |||  |||||||||||| | || |||  |||||||  ||  |||||          a
3'     uc  uuc cucga  gaagucaggu   ugucc ucg  auccuaaguuaa c ga ggc  aguaagu  gu  augac          a
   -uuu  cu   c     gg          uca     u   -a            a a  g   gu       ga  aa     ccauuagagg
Get sequence
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000337.2: 7887933-7888120 [-]
intergenic
Database links

Mature sequence ptc-miR319a

Accession MIMAT0002002
Sequence

160 -  

uuggacugaagggagcuccc

 - 179

Get sequence
Evidence experimental; cloned [1]

References

1
PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
2
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
3
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).