Stem-loop sequence ptc-MIR319b

AccessionMI0002297 (change log)
DescriptionPopulus trichocarpa miR319b stem-loop
Gene family MIPF0000010; MIR159
Literature search

8 open access papers mention ptc-MIR319b
(47 sentences)

Stem-loop 
   u     au   a                 c u    au   aauau         a   -a   ac        c  aa     a  u  gag 
5'  aauag  aag gagcuuuuuucggucca u auag  agu     gauuuaauu guu  ccg  ucauucau ca  uacug gu au   c
    |||||  ||| ||||||||||||||||| | ||||  |||     ||||||||| |||  |||  |||||||| ||  ||||| || ||    
3'  uuguc  uuc cucgagggaagucaggu a uauc  uca     cuaaauuaa cag  ggc  agugagua gu  augac ca ua   u
   -     au   c                 u c    cu   -aauu         a   ag   gu        a  aa     c  u  gaa
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000339.2: 13875330-13875514 [+]
intergenic
Database links

Mature sequence ptc-miR319b

Accession MIMAT0002003
Sequence

157 -  

uuggacugaagggagcuccc

 - 176

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Evidence experimental; cloned [1]

References

1
PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
2
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
3
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).