Stem-loop sequence ptc-MIR396e

Accession

MI0002329 (change log)

Description

Populus trichocarpa miR396e stem-loop

Gene family

MIPF0000047; MIR396

Literature search

7 open access papers mention ptc-MIR396e
(23 sentences)

Stem-loop

   ggu    c                   a     -uu  cuugcuuaaucuguguauauauagaucacuacaug 
5'    caug uuuuccacagcuuucuuga cuucu   gc                                   u
      |||| ||||||||||||||||||| |||||   ||                                    
3'    guac agagggugucgaaagaacu gaagg   cg                                   a
   --g    a                   c     uac  cgauauguauguauauaaauauauauauccucgac 

Confidence

Annotation confidence: not enough data

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Database links

• miRBase Tracker:MI0002329

Mature sequence ptc-miR396e-5p

• Accession: MIMAT0002035
• Previous IDs: ptc-miR396e
• Sequence: 11 - uuccacagcuuucuugaacuu - 31
• Evidence: experimental; miRNAseq [4]

Mature sequence ptc-miR396e-3p

• Accession: MIMAT0022910
• Sequence: 120 - cucaagaaagcugugggaga - 139
• Evidence: experimental; miRNAseq [4]

References

1. PMID:15916721 "Identification and characterization of new plant microRNAs using EST analysis" Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA Cell Res. 15:336-360(2005).
2. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
3. PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).
4. PMID:22442676 "Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets" Puzey JR, Karger A, Axtell M, Kramer EM PLoS One. 7:e33034(2012).