Stem-loop sequence ptc-MIR477b

Accession

MI0002369 (change log)

Description

Populus trichocarpa miR477b stem-loop

Gene family

MIPF0000216; MIR477

Literature search

1 open access papers mention ptc-MIR477b
(1 sentences)

Stem-loop

          c         u        -    --    au   a 
5' caaucuc cucagaggc uccaauau cuca  guuu  agu a
   ||||||| ||||||||| |||||||| ||||  ||||  |||  
3' guuagag ggguuuccg agguugua gagu  uaaa  ucg u
          u         u        a    aa    cu   u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000348.2: 11674627-11674711 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ptc-MIR477b

• ptc-MIR477b: CM000348.2: 11674627-11674711 [-]
• ptc-MIR1446a: CM000348.2: 11674408-11674512 [-]
• ptc-MIR477a: CM000348.2: 11669997-11670081 [-]
• ptc-MIR1446b: CM000348.2: 11669781-11669883 [-]

Database links

• RNAcentral:URS000052B787_3694
• miRBase Tracker:MI0002369

Mature sequence ptc-miR477b

• Accession: MIMAT0002075
• Sequence: 3 - aucucccucagaggcuuccaa - 23
• Evidence: experimental; cloned [1], Northern [1]

References

1. PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).