miRBase entry: ssc-mir-196a-2

Stem-loop ssc-mir-196a-2


Accession
MI0002457
Description
Sus scrofa ssc-mir-196a-2 precursor miRNA
Gene family
MIPF0000031; mir-196

Literature search
16 open access papers mention ssc-mir-196a-2
(105 sentences)

Sequence

uugcucagcugaucuguggcuUAGGUAGUUUCAUGUUGUUGGGauugaguuuugaacucggcaacaagaaacugccugaguuacaucagucgguuaucgucgagggc
..(((((((((((.((((((((((((((((((.((((((((((.((........)))))))))))).))))))))))))))))))...)))))))........))))

Structure
uu    --------       --c                  A          a  gag 
  gcuc        agcugau   uguggcuUAGGUAGUUUC UGUUGUUGGG uu   u
  ||||        |||||||   |||||||||||||||||| |||||||||| ||    
  cggg        uuggcug   acauugaguccgucaaag acaacggcuc aa   u
--    agcugcua       acu                  a          -  guu 


Annotation confidence Not enough data
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Genome context
chr5: 19654956-19655062 [-]

Database links

Mature ssc-miR-196a

Accession MIMAT0002163
Description Sus scrofa ssc-miR-196a mature miRNA
Sequence 22 - UAGGUAGUUUCAUGUUGUUGGG - 43
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168