miRBase entry: ssc-mir-204

Stem-loop ssc-mir-204


Accession
MI0002458
Description
Sus scrofa ssc-mir-204 precursor miRNA
Gene family
MIPF0000042; mir-204

Literature search
12 open access papers mention ssc-mir-204
(121 sentences)

Sequence

23 reads, 27 reads per million, 7 experiments
ggcuacaguccuucucaugugacucguggacUUCCCUUUGUCAUCCUAUGCCUgagaauauaugaaggaggcugggaaggcaaagggacguucaauugucaucacuggc
.....((((.........(((((...(((((.((((((((((.(((((.((((...............))))))))).)))))))))).)))))...))))).))))..

Structure
ggcua    ccuucucau     ucg     U          A     U    gagaau 
     cagu         gugac   uggac UCCCUUUGUC UCCUA GCCU      a
     ||||         |||||   ||||| |||||||||| ||||| ||||      u
     guca         uacug   acuug agggaaacgg agggu cgga      a
---cg    --------c     uua     c          a     -    ggaagu 


Annotation confidence Not enough data
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Genome context
chr1: 250527017-250527125 [-]

Database links

Mature ssc-miR-204

Accession MIMAT0002164
Description Sus scrofa ssc-miR-204 mature miRNA
Sequence 32 - UUCCCUUUGUCAUCCUAUGCCU - 53
Evidence experimental
454 [2], Illumina [3-5]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 19196471
    Cloning, characterization and expression analysis of porcine microRNAs
    Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
    BMC Genomics (2009) 10:65

  3. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  4. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  5. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100