miRBase entry: mmu-mir-495

Stem-loop mmu-mir-495


Accession
MI0004639
Symbol
MGI: Mir495
Description
Mus musculus mmu-mir-495 precursor miRNA
Gene family
MIPF0000110; mir-329

Literature search
24 open access papers mention mmu-mir-495
(88 sentences)

Sequence

23311 reads, 551 reads per million, 81 experiments
aaaGAAGUUGCCCAUGUUAUUUUUCGcuuuuauuugugacgAAACAAACAUGGUGCACUUCUU
.(((((((.(((((((((.(((.((((........)))).)))...))))))).)))))))))

Structure
a       U  -       --A   U    uuu 
 aaGAAGU GC CCAUGUU   UUU UCGc   u
 ||||||| || |||||||   ||| ||||    
 UUCUUCA CG GGUACAA   AAg agug   a
-       -  U       ACA   c    uuu 


Annotation confidence High
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Genome context
chr12: 109718754-109718816 [+]
Clustered miRNAs
23 other miRNAs are < 10 kb from mmu-mir-495
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-495-5p

Accession MIMAT0017249
Description Mus musculus mmu-miR-495-5p mature miRNA
Sequence 4 - GAAGUUGCCCAUGUUAUUUUUCG - 26
Evidence experimental
Illumina [4]
Database links
Predicted targets

Mature mmu-miR-495-3p

Accession MIMAT0003456
Description Mus musculus mmu-miR-495-3p mature miRNA
Sequence 42 - AAACAAACAUGGUGCACUUCUU - 63
Evidence experimental
MPSS [1], cloned [2], Illumina [3-4]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  4. PubMed ID: 16582102
    The expression profile of microRNAs in mouse embryos
    "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
    "Nucleic Acids Res (2006) 34:1765-1771