miRBase entry: mmu-mir-505

Stem-loop mmu-mir-505


Accession
MI0004706
Symbol
MGI: Mir505
Description
Mus musculus mmu-mir-505 precursor miRNA
Gene family
MIPF0000217; mir-505

Literature search
14 open access papers mention mmu-mir-505
(86 sentences)

Sequence

3983 reads, 55 reads per million, 95 experiments
aaauugaugcacccaguggGGGAGCCAGGAAGUAUUGAUGUUucugccagguuagCGUCAACACUUGCUGGUUUUCUcucuggaguauca
....((((((..((((.(((((((((((.((((.((((((((.((....))..)))))))).)))).))))))))))).)))).))))))

Structure
aaau      ac    u           G    A        -u  g 
    ugaugc  ccag ggGGGAGCCAG AAGU UUGAUGUU  cu c
    ||||||  |||| ||||||||||| |||| ||||||||  ||  
    acuaug  gguc cUCUUUUGGUC UUCA AACUGCga  gg c
----      -a    u           G    C        uu  a 


Annotation confidence Not enough data
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Genome context
chrX: 60394403-60394492 [-]

Database links

Mature mmu-miR-505-5p

Accession MIMAT0017259
Description Mus musculus mmu-miR-505-5p mature miRNA
Sequence 20 - GGGAGCCAGGAAGUAUUGAUGUU - 42
Evidence experimental
Illumina [3]
Database links
Predicted targets

Mature mmu-miR-505-3p

Accession MIMAT0003513
Description Mus musculus mmu-miR-505-3p mature miRNA
Sequence 56 - CGUCAACACUUGCUGGUUUUCU - 77
Evidence experimental
MPSS [1], Illumina [2-3]
Database links
Predicted targets

References

  1. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  2. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  3. PubMed ID: 16582102
    The expression profile of microRNAs in mouse embryos
    "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
    "Nucleic Acids Res (2006) 34:1765-1771