miRBase entry: bta-mir-106a

Stem-loop bta-mir-106a


Accession
MI0005005
Description
Bos taurus bta-mir-106a precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
12 open access papers mention bta-mir-106a
(34 sentences)

Sequence

781 reads, 46 reads per million, 59 experiments
ccuuggccauguAAAAGUGCUUACAGUGCAGGUAgcuuuuugagaucuacugcaaugcaagcacuucuuacauuaccaugg
((.(((..((((((((((((((.((.(((((.(((.(((...))).)))))))).)).)))))))).))))))..))).))

Structure
  u   cc      -        A  G     G   c   u 
cc ugg  auguAA AAGUGCUU CA UGCAG UAg uuu  
|| |||  |||||| |||||||| || ||||| ||| ||| u
gg acc  uacauu uucacgaa gu acguc auc aga  
  u   au      c        c  a     -   u   g 


Annotation confidence Not enough data
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Genome context
chrX: 18021857-18021937 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from bta-mir-106a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-106a

Accession MIMAT0003784
Description Bos taurus bta-miR-106a mature miRNA
Sequence 13 - AAAAGUGCUUACAGUGCAGGUA - 34
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43