miRBase entry: bta-mir-192

Stem-loop bta-mir-192


Accession
MI0005035
Description
Bos taurus bta-mir-192 precursor miRNA
Gene family
MIPF0000063; mir-192

Literature search
13 open access papers mention bta-mir-192
(36 sentences)

Sequence

10647625 reads, 91717 reads per million, 77 experiments
agaccgagugcacagggcuCUGACCUAUGAAUUGACAGCCAGugcucuuguguccccucuggcugccaauuccauaggucacagguauguucgccucaaugccagc
.....(((.(((((.(.((.((((((((((((((.(((((((................))))))).))))).))))))))).)).).)))..))))).........

Structure
----agacc   u  --   g g  C         -     A       ugcucuu 
         gag gc  aca g cu UGACCUAUG AAUUG CAGCCAG       g
         ||| ||  ||| | || ||||||||| ||||| |||||||        
         cuc cg  ugu u ga acuggauac uuaac gucgguc       u
cgaccguaa   -  cu   a g  c         c     c       uccccug 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr29: 44018495-44018600 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-mir-192
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-192

Accession MIMAT0003820
Description Bos taurus bta-miR-192 mature miRNA
Sequence 20 - CUGACCUAUGAAUUGACAGCCAG - 42
Evidence experimental
cloned [1,3], Array [2], qRT-PCR [2]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 19267191
    Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
    "Long JE, Chen HX"
    "Biochem Genet (2009) 47:329-343

  3. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677