Stem-loop bta-mir-93

Accession

MI0005050

Description

Bos taurus bta-mir-93 precursor miRNA mir-17

Gene
family

RF00051; mir-17

Literature search

139 open access papers mention bta-mir-93
(799 sentences)

Sequence

2878146 reads, 940.0 reads per million, 320 experiments

cugggggcuccAAAGUGCUGUUCGUGCAGGUAGUGugaucaccugaccuACUGCUGAGCCAGCACUUCCCGAgcccc
...(((((((..((((((((((((.((((.(((.((.(.....).))))))))))))).))))))))...)))))))

Structure

cug       -cA        -    U    G   U  g u 
   ggggcuc   AAGUGCUG UUCG GCAG UAG Gu a c
   |||||||   |||||||| |||| |||| ||| || | a
   ccccgAG   UUCACGAC GAGU CGUC Auc ca u c
---       CCC        C    -    -   -  g c 

Annotation confidence High

Genome context

25: 36355766-36355842 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-93

Mature bta-miR-93-5p

• Accession: MIMAT0003837
• Description: Bos taurus bta-miR-93-5p mature miRNA
• Sequence: 12 - AAAGUGCUGUUCGUGCAGGUAGUG - 35
• Evidence: experimental ; cloned [1]

Mature bta-miR-93-3p

• Accession: MIMAT0060964
• Description: Bos taurus bta-miR-93-3p mature miRNA
• Sequence: 50 - ACUGCUGAGCCAGCACUUCCCGA - 72
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43