miRBase entry: bta-mir-200b

Stem-loop bta-mir-200b


Accession
MI0005055
Description
Bos taurus bta-mir-200b precursor miRNA
Gene family
MIPF0000019; mir-8

Literature search
17 open access papers mention bta-mir-200b
(47 sentences)

Sequence

12811 reads, 309 reads per million, 77 experiments
ccaucuuacugggcagcauuggauggugucuggucucUAAUACUGCCUGGUAAUGAUGa
.(((((((((((((((.((((((.((.......)))))))).))))))))))).)))).

Structure
c    -           c      u  ug 
 cauc uuacugggcag auugga gg  u
 |||| ||||||||||| |||||| ||  c
 GUAG AAUGGUCCGUC UAAUcu cu  u
a    U           A      -  gg 


Annotation confidence High
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Genome context
chr16: 52695246-52695304 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-mir-200b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-200b

Accession MIMAT0003842
Description Bos taurus bta-miR-200b mature miRNA
Sequence 38 - UAAUACUGCCUGGUAAUGAUG - 58
Evidence experimental
cloned [1], Illumina [2]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 21912509
    Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
    "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
    "Int J Biol Sci (2011) 7:1016-1026