miRBase entry: bta-mir-34c

Stem-loop bta-mir-34c


Accession
MI0005068
Description
Bos taurus bta-mir-34c precursor miRNA
Gene family
MIPF0000039; mir-34

Literature search
14 open access papers mention bta-mir-34c
(80 sentences)

Sequence

373 reads, 18 reads per million, 50 experiments
agucuaguuacuAGGCAGUGUAGUUAGCUGAUUGcuaauaauaccaaucacuaaccacacggccagguaaaaagauu
.((((..(((((.(((.((((.(((((.((((((.((....)).))))))))))).)))).))).)))))..)))).

Structure
a    ag     A   A    A     C      c  a 
 gucu  uuacu GGC GUGU GUUAG UGAUUG ua u
 ||||  ||||| ||| |||| ||||| |||||| ||  
 uaga  aaugg ccg caca caauc acuaac au a
u    aa     a   g    c     -      c  a 


Annotation confidence Not enough data
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Comments
The mature miR-34c sequence identified by Sonstegard et al [1] has an A base at position 11 of the mature miRNA, which conflicts with the draft genome sequence that has G as shown here.

Genome context
chr15: 22282382-22282458 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-34c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-34c

Accession MIMAT0003854
Description Bos taurus bta-miR-34c mature miRNA
Sequence 13 - AGGCAGUGUAGUUAGCUGAUUG - 34
Evidence experimental
cloned [1], Array [2], qRT-PCR [2]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677