miRBase entry: sme-mir-10b

Stem-loop sme-mir-10b


Accession
MI0005140
Description
Schmidtea mediterranea sme-mir-10b precursor miRNA

Literature search
1 open access papers mention sme-mir-10b
(1 sentences)

Sequence

cugucaccgaucugAACCCUGUAGAUCCGAGUUUGAuuaaugccaauguugaguuuugaagcauuucaaucaaaaUCGAAUCUUCAAGGUGAAgcuggugauag
(((((((((..((..(((.((.((((.(((.(((((((((((((((.........)))..)))))..))))))).))).)))).)).)))..)).)))))))))

Structure
         au  gA   C  U    C   G       --     --   ugu 
cugucaccg  cu  ACC UG AGAU CGA UUUGAuu  aaugc  caa   u
|||||||||  ||  ||| || |||| ||| |||||||  |||||  |||   g
gauaguggu  gA  UGG AC UCUA GCU aaacuaa  uuacg  guu   a
         -c  AG   A  U    A   a       cu     aa   uug 


Annotation confidence Not enough data
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Genome context
Contig24755: 3773-3876 [-]

Database links

Mature sme-miR-10b-5p

Accession MIMAT0003973
Description Schmidtea mediterranea sme-miR-10b-5p mature miRNA
Sequence 15 - AACCCUGUAGAUCCGAGUUUGA - 36
Evidence experimental
cloned [1], Northern [1], 454 [2], Illumina [2]

Mature sme-miR-10b-3p

Accession MIMAT0003974
Description Schmidtea mediterranea sme-miR-10b-3p mature miRNA
Sequence 76 - UCGAAUCUUCAAGGUGAA - 93
Evidence experimental
cloned [1], 454 [2], Illumina [2-3]

References

  1. PubMed ID: 16849698
    MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
    "Palakodeti D, Smielewska M, Graveley BR"
    "RNA (2006) 12:1640-1649

  2. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  3. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491