miRBase entry: sme-mir-31b-1

Stem-loop sme-mir-31b-1


Accession
MI0005146
Description
Schmidtea mediterranea sme-mir-31b-1 precursor miRNA
Gene family
MIPF0000064; mir-31

Literature search
1 open access papers mention sme-mir-31b-1
(1 sentences)

Sequence

auugauaaugacaAGGCAAGAUGCUGGCAUAGCUGAuaaacuauuuauuacCAGCUAUUCAGGAUCUUUCCCUgaauauaucaau
(((((((....((.((.(((((.((((.(((((((.(((........))).))))))))))).))))).)).))....)))))))

Structure
       auga  A  C     G    C       A   acu 
auugaua    ca GG AAGAU CUGG AUAGCUG uaa   a
|||||||    || || ||||| |||| ||||||| |||    
uaacuau    gU CC UUCUA GACU UAUCGAC auu   u
       auaa  C  U     G    -       c   auu 


Annotation confidence Not enough data
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Genome context
Contig5733: 42326-42410 [+]

Database links

Mature sme-miR-31b-5p

Accession MIMAT0003980
Description Schmidtea mediterranea sme-miR-31b-5p mature miRNA
Sequence 14 - AGGCAAGAUGCUGGCAUAGCUGA - 36
Evidence experimental
Illumina [1-2], 454 [2]

Mature sme-miR-31b-1-3p

Accession MIMAT0011413
Description Schmidtea mediterranea sme-miR-31b-1-3p mature miRNA
Sequence 52 - CAGCUAUUCAGGAUCUUUCCCU - 73
Evidence experimental
454 [2], Illumina [2-3]

References

  1. PubMed ID: 16849698
    MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
    "Palakodeti D, Smielewska M, Graveley BR"
    "RNA (2006) 12:1640-1649

  2. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  3. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491