Stem-loop sme-mir-36a

Accession

MI0005147

Description

Schmidtea mediterranea sme-mir-36a precursor miRNA

Sequence

agccacaguguuuUGAUGCAUGCUACUUGGUUUuguuguuauuauauuaacaUCACCGGGUAGACAUUCAUUAuacaacuguuguu
.((.(((((....(((((.((((((((((((..(((((.........)))))..))))))))).))).)))))....))))).)).

Structure

a  c     guuu     C   -         UU     uua 
 gc acagu    UGAUG AUG CUACUUGGU  uguug   u
 || |||||    ||||| ||| |||||||||  |||||   u
 ug uguca    AUUAC UAC GAUGGGCCA  acaau   a
u  u     acau     U   A         CU     uau 

Annotation confidence Not enough data

Genome context

Contig3934: 37835-37920 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sme-mir-36a

Mature sme-miR-36a-5p

• Accession: MIMAT0003981
• Description: Schmidtea mediterranea sme-miR-36a-5p mature miRNA
• Sequence: 14 - UGAUGCAUGCUACUUGGUUU - 33
• Evidence: experimental ; cloned [1], 454 [2], Illumina [2-3]

Mature sme-miR-36a-3p

• Accession: MIMAT0003982
• Description: Schmidtea mediterranea sme-miR-36a-3p mature miRNA
• Sequence: 53 - UCACCGGGUAGACAUUCAUUA - 73
• Evidence: experimental ; cloned [1], 454 [2], Illumina [2-3]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491