Stem-loop sme-mir-71c

Accession

MI0005152

Description

Schmidtea mediterranea sme-mir-71c precursor miRNA

Gene family

MIPF0000278; mir-71

Literature search

2 open access papers mention sme-mir-71c
(2 sentences)

Sequence

guaguuuucuUGAAAGACAUGGGUAGUGAGAUuauuuaaauuaaauauuuaaaaUCUCAUUAUUCAAGUUUUUCUUAuaagc
...((((....(((((((.((((((((((((((..((((((.....)))))))))))))))))))).)))))))....))))

Structure

gua    ucuU       A              au      u 
   guuu    GAAAGAC UGGGUAGUGAGAUu  uuaaau a
   ||||    ||||||| ||||||||||||||  |||||| a
   cgaa    CUUUUUG ACUUAUUACUCUaa  aauuua a
---    uAUU       A              --      u 

Annotation confidence Not enough data

Genome context

Contig297: 116135-116216 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sme-mir-71c

Mature sme-miR-71c-5p

• Accession: MIMAT0003987
• Description: Schmidtea mediterranea sme-miR-71c-5p mature miRNA
• Sequence: 11 - UGAAAGACAUGGGUAGUGAGAU - 32
• Evidence: experimental ; cloned [1], Northern [1], 454 [2], Illumina [2]

Mature sme-miR-71c-3p

• Accession: MIMAT0012107
• Description: Schmidtea mediterranea sme-miR-71c-3p mature miRNA
• Sequence: 55 - UCUCAUUAUUCAAGUUUUUCUUA - 77
• Evidence: experimental ; 454 [2], Illumina [2-3]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491