Stem-loop sme-mir-124a

Accession

MI0005157

Description

Schmidtea mediterranea sme-mir-124a precursor miRNA

Gene family

MIPF0000021; mir-124

Literature search

2 open access papers mention sme-mir-124a
(7 sentences)

Sequence

uucaaucagaugUGCUUUUAACGCGGAGCUUUAGUaauuuaacauguauacUAAGGCACGCGGUGAAUGCUUacuugauugag
.((((((((.((.((.(((..((((..(((((((((............))))))))).))))..))).)).)).)))))))).

Structure

u        a  U  U   AA    GA         auuua 
 ucaaucag ug GC UUU  CGCG  GCUUUAGUa     a
 |||||||| || || |||  ||||  |||||||||      
 aguuaguu aU CG AAG  GCGC  CGGAAUcau     c
g        c  U  U   UG    -A         augua 

Annotation confidence Not enough data

Genome context

Contig19989: 5815-5897 [-]

Mature sme-miR-124a-5p

• Accession: MIMAT0012112
• Description: Schmidtea mediterranea sme-miR-124a-5p mature miRNA
• Sequence: 13 - UGCUUUUAACGCGGAGCUUUAGU - 35
• Evidence: experimental ; 454 [2], Illumina [2-3]

Mature sme-miR-124a-3p

• Accession: MIMAT0003992
• Description: Schmidtea mediterranea sme-miR-124a-3p mature miRNA
• Sequence: 52 - UAAGGCACGCGGUGAAUGCUU - 72
• Evidence: experimental ; cloned [1], Northern [1], 454 [2], Illumina [2]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491