miRBase entry: sme-mir-124b

Stem-loop sme-mir-124b


Accession
MI0005158
Description
Schmidtea mediterranea sme-mir-124b precursor miRNA
Gene family
MIPF0000021; mir-124

Literature search
2 open access papers mention sme-mir-124b
(7 sentences)

Sequence

guauccaugaaaauuUGCAUUUACAACGUGUCUUUAGUucaugugacacUAAGGCACGCGGUGAAUGCUGAauuaaaugguuua
....((((...(((((((((((((..((((((((.(((((....)).)))))))))))..)))))))).)))))..))))....

Structure
guau    gaa     -        AA        U   -  a 
    ccau   aauuU GCAUUUAC  CGUGUCUU AGU uc u
    ||||   ||||| ||||||||  |||||||| ||| ||  
    ggua   uuaAG CGUAAGUG  GCACGGAA Uca ag g
auuu    -aa     U        GC        -   c  u 


Annotation confidence Not enough data
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Genome context
Contig12040: 20049-20132 [-]

Database links

Mature sme-miR-124b-5p

Accession MIMAT0012113
Description Schmidtea mediterranea sme-miR-124b-5p mature miRNA
Sequence 16 - UGCAUUUACAACGUGUCUUUAGU - 38
Evidence experimental
454 [2], Illumina [2-3]

Mature sme-miR-124b-3p

Accession MIMAT0003993
Description Schmidtea mediterranea sme-miR-124b-3p mature miRNA
Sequence 50 - UAAGGCACGCGGUGAAUGCUGA - 71
Evidence experimental
cloned [1], Northern [1], 454 [2], Illumina [2]

References

  1. PubMed ID: 16849698
    MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
    "Palakodeti D, Smielewska M, Graveley BR"
    "RNA (2006) 12:1640-1649

  2. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  3. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491