miRBase entry: sme-mir-277c

Stem-loop sme-mir-277c


Accession
MI0005170
Description
Schmidtea mediterranea sme-mir-277c precursor miRNA

Literature search
1 open access papers mention sme-mir-277c
(2 sentences)

Sequence

aucauuuauauuaAUCAUAUCAGAUUUGCAUUAUUauuaugaauuaaacaucaaUAAAUGCAUUAUCUGGUAUGAUauuugaaaugau
(((((((......((((((((((((.((((((..(((((((.......))).))))))))))..)))))))))))).....)))))))

Structure
       auauua            -U      AU    -   aa 
aucauuu      AUCAUAUCAGAU  UGCAUU  Uauu aug  u
|||||||      ||||||||||||  ||||||  |||| |||  u
uaguaaa      UAGUAUGGUCUA  ACGUAA  AUaa uac  a
       -guuua            UU      --    c   aa 


Annotation confidence Not enough data
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Genome context
Contig520: 104019-104106 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from sme-mir-277c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sme-miR-277c-5p

Accession MIMAT0012120
Description Schmidtea mediterranea sme-miR-277c-5p mature miRNA
Sequence 14 - AUCAUAUCAGAUUUGCAUUAUU - 35
Evidence experimental
454 [2], Illumina [2-3]

Mature sme-miR-277c-3p

Accession MIMAT0004010
Description Schmidtea mediterranea sme-miR-277c-3p mature miRNA
Sequence 55 - UAAAUGCAUUAUCUGGUAUGAU - 76
Evidence experimental
cloned [1], Northern [1], 454 [2], Illumina [2]

References

  1. PubMed ID: 16849698
    MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
    "Palakodeti D, Smielewska M, Graveley BR"
    "RNA (2006) 12:1640-1649

  2. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  3. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491