Stem-loop sequence mdo-mir-1-1

Accession

MI0005269 (change log)

Description

Monodelphis domestica miR-1-1 stem-loop

Gene family

MIPF0000038; mir-1

Stem-loop

   -       c                     ac     ugaaca 
5'  accuacu agaguacauacuucuuuaugu  ccaua      u
    ||||||| |||||||||||||||||||||  |||||       
3'  uggaugg uuuuauguaugaagaaaugua  gguau      a
   g       u                     -a     cguaac 

Deep sequencing

8430104 reads, 1.12e+05 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MonDom5; GCF_000002295.2): chr3: 263364374-263364459 [+]
• Overlapping transcripts:

  antisense

  ENSMODT00000027331 ; MIB1-201; intron 12

Clustered miRNAs

< 10kb from mdo-mir-1-1

• mdo-mir-1-1: chr3: 263364374-263364459 [+]
• mdo-mir-133a-1: chr3: 263368065-263368151 [+]

Database links

• EntrezGene:Mir1
• miRBase Tracker:MI0005269

Mature sequence mdo-miR-1-1-5p

• Accession: MIMAT0026647
• Sequence: 14 - acauacuucuuuauguacccaua - 36
• Deep sequencing: 3 reads, 1 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:mdo-miR-1-1-5p

Mature sequence mdo-miR-1-3p

• Accession: MIMAT0004085
• Sequence: 53 - uggaauguaaagaaguauguau - 74
• Deep sequencing: 16574010 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00001DC04F_13616
• Predicted targets:
  • TargetScanVert:mdo-miR-1-3p

References

1. PMID:17965199 "In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica" Devor EJ, Samollow PB J Hered. 99:66-72(2008).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).