Stem-loop mdo-mir-9a-2

Accession

MI0005271

Description

Monodelphis domestica mdo-mir-9a-2 precursor miRNA

Sequence

1672579 reads, 24864 reads per million, 5 experiments

ggaagugaguuguuaUCUUUGGUUAUCUAGCUGUAUGAguguauuggucuucAUAAAGCUAGAUAACCGAAAGUaaaaacuccuuca
.((((.(((((.((((.(((((((((((((((.((((((.(.......))))))).))))))))))))))).)))).))))))))).

Structure

g    u     g    C               G      u ua 
 gaag gaguu uuaU UUUGGUUAUCUAGCU UAUGAg g  u
 |||| ||||| |||| ||||||||||||||| |||||| |  u
 cuuc cucaa aaUG AAGCCAAUAGAUCGA AUAcuu c  g
a    -     a    A               A      - ug 

Annotation confidence High

Genome context

chr3: 215711846-215711932 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-9a-2

Mature mdo-miR-9a-3p

• Accession: MIMAT0004088
• Description: Monodelphis domestica mdo-miR-9a-3p mature miRNA
• Sequence: 53 - AUAAAGCUAGAUAACCGAAAGU - 74
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-9a-5p

• Accession: MIMAT0004087
• Description: Monodelphis domestica mdo-miR-9a-5p mature miRNA
• Sequence: 16 - UCUUUGGUUAUCUAGCUGUAUGA - 38
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72