Stem-loop sequence mdo-mir-9a-2

Accession

MI0005271 (change log)

Description

Monodelphis domestica miR-9a-2 stem-loop

Gene family

MIPF0000014; mir-9

Stem-loop

   g    u     g   uc               g      ug a 
5'  gaag gaguu uua  uuugguuaucuagcu uaugag  u u
    |||| ||||| |||  ||||||||||||||| ||||||  |  
3'  cuuc cucaa aau  aagccaauagaucga auacuu  g u
   a    -     a   ga               a      cu g 

Deep sequencing

2380665 reads, 3.39e+04 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (MonDom5; GCF_000002295.2): chr3: 215711846-215711932 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mdo-mir-9a-2

• mdo-mir-9a-2: chr3: 215711846-215711932 [+]
• mdo-mir-9c-2: chr3: 215711861-215711916 [-]

Database links

• EntrezGene:Mir9-2
• miRBase Tracker:MI0005271

Mature sequence mdo-miR-9a-5p

• Accession: MIMAT0004087
• Previous IDs: mdo-miR-9
• Sequence: 16 - ucuuugguuaucuagcuguauga - 38
• Deep sequencing: 6991910 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00004208C5_13616
• Predicted targets:
  • TargetScanVert:mdo-miR-9a-5p

Mature sequence mdo-miR-9a-3p

• Accession: MIMAT0004088
• Previous IDs: mdo-miR-9*
• Sequence: 53 - auaaagcuagauaaccgaaagu - 74
• Deep sequencing: 145444 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00003496BE_13616
• Predicted targets:
  • TargetScanVert:mdo-miR-9a-3p

References

1. PMID:17965199 "In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica" Devor EJ, Samollow PB J Hered. 99:66-72(2008).