Stem-loop sequence mdo-mir-19a

Accession

MI0005356 (change log)

Description

Monodelphis domestica miR-19a stem-loop

Gene family

MIPF0000011; mir-19

Stem-loop

   g   u  u                 --      ---    ag 
5'  cag cc cuguuaguuuugcauag  uugcac   uaca  a
    ||| || |||||||||||||||||  ||||||   ||||  a
3'  guc gg gguagucaaaacguauc  aacgug   augu  g
   -   c  u                 ua      uug    aa 

Deep sequencing

5824 reads, 40 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MonDom5; GCF_000002295.2): chr7: 108468609-108468689 [-]
• Overlapping transcripts:

  sense

  ENSMODT00000028221 ; mdo-mir-19a-201; exon 1

Clustered miRNAs

< 10kb from mdo-mir-19a

• mdo-mir-17: chr7: 108468894-108468978 [-]
• mdo-mir-18a: chr7: 108468760-108468831 [-]
• mdo-mir-19a: chr7: 108468609-108468689 [-]
• mdo-mir-20a: chr7: 108468430-108468531 [-]
• mdo-mir-19b-1: chr7: 108468305-108468393 [-]
• mdo-mir-92a-1: chr7: 108468191-108468268 [-]

Database links

• EntrezGene:Mir19a
• miRBase Tracker:MI0005356

Mature sequence mdo-miR-19a-5p

• Accession: MIMAT0026706
• Sequence: 14 - aguuuugcauaguugcacuac - 34
• Deep sequencing: 4 reads, 1 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:mdo-miR-19a-5p

Mature sequence mdo-miR-19a-3p

• Accession: MIMAT0004168
• Sequence: 49 - ugugcaaaucuaugcaaaacuga - 71
• Deep sequencing: 5819 reads, 5 experiments
• Evidence: experimental; Microarray [1], PCR [1], Illumina [2]
• Predicted targets:
  • TargetScanVert:mdo-miR-19a-3p

References

1. PMID:17965199 "In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica" Devor EJ, Samollow PB J Hered. 99:66-72(2008).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).