Stem-loop ath-MIR840

Accession

MI0005396

Description

Arabidopsis thaliana ath-MIR840 precursor miRNA

Gene family

MIPF0001129; MIR840

Sequence

cguaaagcaggugauucaccaauuuagguuuacauccacaguguggaagACACUGAAGGACCUAAACUAACaaagguaaacggcucagugugcgggguauuacacucgguuuaaugucugaaugcgauaauccgcacgaugaucucuuuaucuuuguUUGUUUAGGUCCCUUAGUUUCuucuauaccgugaauccaauccuguauuggaugagcugguuuaugacc
((((((.(((.(.((...(((((.((((........(((.((((((((((.(((((.((((((((((.((((((((((((.((.(((.((((((((.((((.((.((((........)))).)).)))).)))))))).))).)).)))))))))))).)))))))))).))))).)))))))))).)))........)))).))))))).).))).))))))...

Structure

---      g   g g  uca     u    uuuacauc   a          C     A          U            c  c   g        g    a  c    uuu 
   cguaaa cag u au   ccaau uagg        cac guguggaagA ACUGA GGACCUAAAC AACaaagguaaa gg uca ugugcggg uauu ca ucgg   a
   |||||| ||| | ||   ||||| ||||        ||| |||||||||| ||||| |||||||||| |||||||||||| || ||| |||||||| |||| || ||||    
   guauuu guc a ua   gguua gucc        gug cauaucuuCU UGAUU CCUGGAUUUG Uuguuucuauuu uc agu gcacgccu auag gu aguc   a
cca      g   g g  ---     u    uaaccuaa   c          U     C          U            c  u   a        a    c  a    ugu 

Annotation confidence Not enough data

Genome context

chr2: 771337-771562 [-]

Mature ath-miR840-5p

• Accession: MIMAT0004262
• Description: Arabidopsis thaliana ath-miR840-5p mature miRNA
• Sequence: 50 - ACACUGAAGGACCUAAACUAAC - 71
• Evidence: experimental ; 454 [1-2], cloned [2]

Mature ath-miR840-3p

• Accession: MIMAT0032021
• Description: Arabidopsis thaliana ath-miR840-3p mature miRNA
• Sequence: 158 - UUGUUUAGGUCCCUUAGUUUC - 178
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


2. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219


3. PubMed ID: 24119003
   Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
   Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
   BMC Genomics (2013) 14:701