Stem-loop dme-mir-988

Accession

MI0005847

Description

Drosophila melanogaster dme-mir-988 precursor miRNA

Gene family

MIPF0000724; mir-988

Literature search

1 open access papers mention dme-mir-988
(6 sentences)

Sequence

98383 reads, 4665 reads per million, 49 experiments

gacggcgguaccgggcauuuuggguGUGUGAUUUGUAGCAAAGUGAUauguauuugaucauCCCCUUGUUGCAAACCUCACGCcaaagaugaucugcga
....((((.......((((((.((((((.(.((((((((((.(((((.........)))))....)))))))))).).)))))).))))))..))))..

Structure

gacg    uaccggg      g      U A          ---A     aug 
    gcgg       cauuuu gguGUG G UUUGUAGCAA    GUGAU   u
    ||||       |||||| |||||| | ||||||||||    |||||   a
    cguc       guagaa cCGCAC C AAACGUUGUU    uacua   u
--ag    -----ua      a      U C          CCCC     guu 

Annotation confidence High

Genome context

chr2R: 12158872-12158970 [-]

Mature dme-miR-988-3p

• Accession: MIMAT0005505
• Description: Drosophila melanogaster dme-miR-988-3p mature miRNA
• Sequence: 62 - CCCCUUGUUGCAAACCUCACGC - 83
• Evidence: experimental ; 454 [1-3], Illumina [2]

Mature dme-miR-988-5p

• Accession: MIMAT0020886
• Description: Drosophila melanogaster dme-miR-988-5p mature miRNA
• Sequence: 26 - GUGUGAUUUGUAGCAAAGUGAU - 47
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


2. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879


3. PubMed ID: 18463636
   Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells
   "Kawamura Y, Saito K, Kin T, Ono Y, Asai K, Sunohara T, Okada TN, Siomi MC, Siomi H"
   "Nature (2008) 453:793-797