Stem-loop sequence tae-MIR1130a

Accession

MI0006192 (change log)

Previous IDs

tae-MIR1130

Description

Triticum aestivum miR1130 stem-loop

Gene family

MIPF0000344; MIR818

Literature search

5 open access papers mention tae-MIR1130a
(12 sentences)

Stem-loop

   aaa   cuu     -  -                           auaa  uauguu  u  gua 
5'    ugu   auacu cc cuccgucucguaauguaagacguuuuu    gc      ag cu   a
      |||   ||||| || |||||||||||||||||||||||||||    ||      || ||   a
3'    acg   uauga gg gaggcaggguauuacauucugcaaaaa    cg      uc ga   a
   gca   -uu     u  u                           ----  ----uu  u  aaa 

Deep sequencing

27364 reads, 0 reads per million, 116 experiments

Confidence

Annotation confidence: not enough data

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Comments

Yao et al. misname this sequence miR514 in [1]. miR1130 is unrelated to mammalian miR-514;

Database links

• miRBase Tracker:MI0006192

Mature sequence tae-miR1130a

• Accession: MIMAT0005365
• Previous IDs: tae-miR1130
• Sequence: 16 - ccuccgucucguaauguaagacg - 38
• Deep sequencing: 1275 reads, 116 experiments
• Evidence: experimental; cloned [1], Northern [1]

References

1. PMID:17543110 "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)" Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q Genome Biol. 8:R96(2007).