Stem-loop sequence tae-MIR1138

Accession

MI0006200 (change log)

Description

Triticum aestivum miR1138 stem-loop

Literature search

2 open access papers mention tae-MIR1138
(2 sentences)

Stem-loop

   aucuuguaua   c   c   ga        a    gaca   cu                ga  u   c c   -u      cuauuuuuuuuauccu 
5'           ggu ugu uag  cacaucua augu    uaa  augucacaucuaagcu  ug caa u ugu  uguggu                a
             ||| ||| |||  |||||||| ||||    |||  ||||||||||||||||  || ||| | |||  ||||||                g
3'           uca aca auu  guguagau uaca    auu  uacaguguagauucga  au guu a aua  acaucg                u
   ----uucuag   a   a   aa        c    -aaa   cc                gg  -   u u   uu      uuauucuuuauuuuuu 

Deep sequencing

7160 reads, 0 reads per million, 116 experiments

Confidence

Annotation confidence: low

Feedback: Do you believe this miRNA is real?

Comments

Yao et al. misname this sequence miR522 in [1]. miR1138 is unrelated to mammalian miR-522;

Database links

• miRBase Tracker:MI0006200

Mature sequence tae-miR1138

• Accession: MIMAT0005373
• Sequence: 140 - gcuuagaugugacauccuuaaaa - 162
• Deep sequencing: 1407 reads, 116 experiments
• Evidence: experimental; cloned [1]

References

1. PMID:17543110 "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)" Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q Genome Biol. 8:R96(2007).