miRBase entry: mmu-mir-669d

Stem-loop mmu-mir-669d


Accession
MI0006281
Symbol
MGI: Mir669d
Description
Mus musculus mmu-mir-669d precursor miRNA
Gene family
MIPF0000316; mir-467

Literature search
10 open access papers mention mmu-mir-669d
(13 sentences)

Sequence

2462 reads, 100 reads per million, 90 experiments
cagcccgggauuuguguguugcuugcucuauauguguguauACUUGUGUGUGCAUGUAUAUGUguguauaugaauauacaUAUACAUACACACCCAUAUACacacgcaugcaugcacacac
............((((((((((.(((.......(((((((((..((.(((((.((((((((((((((......)))))))))))))).))))).)))))))))))))).))).))))))).

Structure
cagcccgggauu       -   u   ucuauau         CU  U     C              au 
            ugugugu ugc ugc       guguguauA  UG GUGUG AUGUAUAUGUgugu  a
            ||||||| ||| |||       |||||||||  || ||||| ||||||||||||||   
            acacacg acg acg       cacaCAUAU  AC CACAC UACAUAUacauaua  u
-----------c       u   u   -------         --  C     A              ag 


Annotation confidence High
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Genome context
chr2: 10468343-10468463 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from mmu-mir-669d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-669d-5p

Accession MIMAT0005833
Description Mus musculus mmu-miR-669d-5p mature miRNA
Sequence 42 - ACUUGUGUGUGCAUGUAUAUGU - 63
Evidence experimental
Illumina [1]
Database links
Predicted targets

Mature mmu-miR-669d-3p

Accession MIMAT0017324
Description Mus musculus mmu-miR-669d-3p mature miRNA
Sequence 81 - UAUACAUACACACCCAUAUAC - 101
Evidence experimental
454 [3], Illumina [4]
Database links
Predicted targets

References

  1. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  2. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  3. PubMed ID: 20668074
    Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68
    "Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H"
    "J Virol (2010) 84:10266-10275

  4. PubMed ID: 17989215
    RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
    "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
    "Proc Natl Acad Sci U S A (2007) 104:18097-18102